As RLee states, I do not know specifics on all of those streams, including the ones you pointed out. Merely that the commission lists them as class A browns, NOT MIXED, to the headwaters. That's not to say that there are no brookies. It's also not to say the sampling is complete nor up to date. Just that according to the list, 75% or more of the biomass is brown trout the whole way to the top.
A few of them are indeed dominated by browns to the top, from personal experience.
In addition to pH, temps, structure, etc., RLeeP does bring up another good point regarding access to a truly BT dominated stream. Certainly, I've caught browns with a lack of brookies in some really tiny trickles, unnamed tributary size, that are near larger brown trout streams.
That is definitely not a pH thing. Because it's the same water flowing through both sections.
I'm not asserting that it IS a pH thing, and I do agree on the importance of other factors. But it COULD be a pH thing. It's the same water, yes. However, even in freestoners, there's a difference between the pH and buffering capability of spring water vs. pure runoff.
At the very top end of streams, during a rain/snow melt event, the % of flow from runoff (rather than springs) is much higher, hence your low pH spikes may be more severe. As you get downstream, a higher % is from springs. Further, keeping in mind that the source of a stream is generally from a single geological formation, which may or may not have any real buffering capability. As a stream falls, it may pass through other geological formations. Picking up springs with better buffering as it goes, and also some portion of the stream is usually flowing in the gravel under the streambed, which can offer some buffering.