I sent you a quick PM yesterday morning... If you are working out of a kayak, that makes things a little easier than if you are wading.
Basically, you are looking for all the types of habitat/conditions you mentioned. There are lots of conventional weed weds in places like Misery Bay, etc. Further west, towards mid-bay (on the north side) there are large reed beds here and there that also hold fish. And wherever you are bass fishing, you're always watching for bass shagging minnows, etc. You know that...
As I sort of said in the PM, I think the most important thing is to find suitable habitat in a part of the bay that is sufficiently open and gets decent wave action to enhance oxygen levels and does not completely choke up with weeds. This means the farther into the summer you get, the more you should avoid the lagoons and the westernmost section of the bay. The bass will seldom be there much after mid-June. On the other hand, this is where the carp will probably be..